This document is an example Cygnus Report that can be generated at the last step of Cygnus data analysis. Each plot shown in this file is generated when the corresponding R markdown file is knitted to HTML, and hence can be reused with another Cygnus data to generate a similar report. All codes are hidden in the final HTML file to simplify the report.

Object Summary

## CygnusData Object: 
## Number of EVs:  107871 
## Number of markers:  12 
## Present Metadata:  stage image

Data Exploration

Marker Analysis

Marker co-localization analysis

Marker correlation analysis

EV analysis

Dimensionality Reduction - tSNE

Dimensionality Reduction - UMAP

Clustering Analysis

Cluster Characterization